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==In bash, at Moria== | ==In bash, at Moria== | ||
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Extract the first column: | Extract the first column: | ||
awk '{print $1}' sizes.out > sizesQ.out | awk '{print $1}' sizes.out > sizesQ.out | ||
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==At CUBE== | ==At CUBE== | ||
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Assess completeness, contamination and heterogeneity of the genomes in a folder: | Assess completeness, contamination and heterogeneity of the genomes in a folder: | ||
checkm lineage_wf -t 8 /proj/genomes/Thiobios/results/2017_08_24_checkM/data /proj/genomes/Thiobios/results/2017_08_24_checkM/therest.checkm --tab_table --file therest.checkm.out | checkm lineage_wf -t 8 /proj/genomes/Thiobios/results/2017_08_24_checkM/data /proj/genomes/Thiobios/results/2017_08_24_checkM/therest.checkm --tab_table --file therest.checkm.out | ||
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