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Here I put stuff of relevance in my PhD. | Here I put stuff of relevance in my PhD. | ||
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*Bapteste et al. find with heatmaps no congruency in ortholog gene sets, failing to support tree-thinking. | *Bapteste et al. find with heatmaps no congruency in ortholog gene sets, failing to support tree-thinking. | ||
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*Charlebois and Doolittle "rescue the core from extinction". | *Charlebois and Doolittle "rescue the core from extinction". | ||
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*Gogarten et al. kills 16S trees. | *Gogarten et al. kills 16S trees. | ||
<blockquote> "... tree-like phylogenies are inadecuate to represent the pattern of prokaryotic evolution at any level." </blockquote> | <blockquote> "... tree-like phylogenies are inadecuate to represent the pattern of prokaryotic evolution at any level." </blockquote> | ||
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− | + | ==1997== | |
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*Maddison et al. describe the gene trees in the species trees. | *Maddison et al. describe the gene trees in the species trees. | ||
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==References== | ==References== | ||
Bapteste, E. et al. Do orthologous gene phylogenies really support tree-thinking? BMC Evolutionary Biology 5, 1-10, doi:10.1186/1471-2148-5-33 (2005). | Bapteste, E. et al. Do orthologous gene phylogenies really support tree-thinking? BMC Evolutionary Biology 5, 1-10, doi:10.1186/1471-2148-5-33 (2005). | ||
Charlebois, R. L. & Doolittle, W. F. Computing prokaryotic gene ubiquity: Rescuing the core from extinction. Genome Research 14, 2469-2477, doi:10.1101/gr.3024704 (2004). | Charlebois, R. L. & Doolittle, W. F. Computing prokaryotic gene ubiquity: Rescuing the core from extinction. Genome Research 14, 2469-2477, doi:10.1101/gr.3024704 (2004). | ||
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Gogarten, J. P., Doolittle, W. F. & Lawrence, J. G. Prokaryotic evolution in light of gene transfer. Molecular Biology and Evolution 19, 2226-2238, doi:10.1093/oxfordjournals.molbev.a004046 (2002). | Gogarten, J. P., Doolittle, W. F. & Lawrence, J. G. Prokaryotic evolution in light of gene transfer. Molecular Biology and Evolution 19, 2226-2238, doi:10.1093/oxfordjournals.molbev.a004046 (2002). | ||
Maddison, W. P. Gene trees in species trees. Systematic Biology 46, 523-536, doi:10.1093/sysbio/46.3.523 (1997). | Maddison, W. P. Gene trees in species trees. Systematic Biology 46, 523-536, doi:10.1093/sysbio/46.3.523 (1997). | ||
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